This section provides details for each class and property defined by Cellosaurus ontology.
Classes
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/CellLine
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Is defined by
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https://purl.expasy.org/cellosaurus/rdf/ontology/
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is equivalent to
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Q21014462 c
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has sub-classes
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Cancer cell line c, Conditionally immortalized cell line c, Embryonic stem cell c, Factor dependent cell line c, Finite cell line c, Hybrid cell line c, Hybridoma c, Induced pluripotent stem cell c, Somatic stem cell c, Spontaneously immortalized cell line c, Stromal cell line c, Telomerase immortalized cell line c, Transformed cell line c
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is in domain of
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accession dp, created dp, derived from cell type op, derived from individual at age dp, derived from individual belonging to breed op, derived from individual belonging to population op, derived from individual belonging to species op, derived from individual with disease op, derived from individual with sex op, derived from same individual as op, derived from site op, established by op, has HLA typing op, has anecdotal comment op, has biotechnology comment op, has caution comment op, has characteristics comment op, has child cell line op, has discontinuation record op, has donor info comment op, has doubling time op, has gene knockout op, has genetic integration op, has genome ancestry op, has karyotypic info comment op, has microsatellite instability op, has miscellaneous info comment op, has misspelling record op, has monoclonal antibody isotype op, has monoclonal antibody target op, has parent cell line op, has problematic cell line comment op, has registation record op, has resistance op, has senescence comment op, has sequence variation info op, has short tandem repeat profile op, has virology comment op, in collection dp, in group dp, modified dp, primary accession dp, references ap, secondary accession dp, transformed by op, version dp
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is in range of
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derived from same individual as op, has child cell line op, has parent cell line op
Cell line annotation topicc back to ToC or Class ToC
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/CellLineAnnotationTopic
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is equivalent to
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Topic c and ({ Anecdotal ni , Biotechnology ni , Caution ni , Characteristics ni , Discontinuation ni , DonorInfo ni , Doubling time ni , Miscellaneous ni , Misspelling ni , Omics ni , Problematic cell line ni , Registration ni , Senescence ni , Virology ni })
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has super-classes
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Topic c
Cell line collections (Providers)c back to ToC or Class ToC
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/CellLineCollectionsProviders
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Is defined by
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https://purl.expasy.org/cellosaurus/rdf/ontology/
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has super-classes
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Database c
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has members
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ABM ni, ATCC ni, Abcam ni, Abeomics ni, AddexBio ni, BCRC ni, BCRJ ni, BEI_Resources ni, CBA ni, CCLV ni, CCTCC ni, CLS ni, CancerTools ni, Cell_Biolabs ni, Coriell ni, DGRC ni, DSHB ni, DSMZ ni, DiscoverX ni, EBiSC ni, ECACC ni, Evercyte ni, FCDI ni, GeneCopoeia ni, Genomeditech ni, HIVReagentProgram ni, Horizon_Discovery ni, Hysigen ni, IBRC ni, ICLC ni, IZSLER ni, Imanis ni, Innoprot ni, JCRB ni, KCB ni, KCLB ni, KYinno ni, Kerafast ni, MMRRC ni, Millipore ni, NCBI_Iran ni, NCI-DTP ni, NHCDR ni, NISES ni, NRFC ni, PerkinElmer ni, RCB ni, RIKEN_BRC_EPD ni, RSCB ni, Rockland ni, Sigma-Aldrich ni, TKG ni, TNGB ni, Ubigene ni, WiCell ni, Ximbio ni
Cell line databases/resourcesc back to ToC or Class ToC
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/CellLineDatabasesResources
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Is defined by
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https://purl.expasy.org/cellosaurus/rdf/ontology/
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has super-classes
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Database c
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has members
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CCRID ni, CGH-DB ni, CLDB ni, CLO ni, Cell_Model_Passport ni, Cellosaurus ni, ColonAtlas ni, Cosmic-CLP ni, DSMZCellDive ni, DepMap ni, ESTDAB ni, FCS-free ni, FlyBase_Cell_line ni, HipSci ni, ICLDB ni, IGRhCellID ni, IHW ni, IPD-IMGT/HLA ni, LIMORE ni, LINCS_HMS ni, LINCS_LDP ni, Lonza ni, MCCL ni, NIHhESC ni, SKIP ni, SKY/M-FISH/CGH ni, SLKBase ni, TOKU-E ni, cancercelllines ni, dbMHC ni, hPSCreg ni
IRI: http://purl.obolibrary.org/obo/IAO_0000027
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Is defined by
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http://purl.obolibrary.org/obo/IAO_
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has sub-classes
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Anecdotal comment c, Biotechnology comment c, Caution comment c, Characteristics comment c, Discontinuation record c, Donor info comment c, Doubling time c, Miscellaneous info comment c, Misspelling record c, Omics info c, Problematic cell line comment c, Registration record c, Senescence comment c, Virology comment c
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Database
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Is defined by
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https://purl.expasy.org/cellosaurus/rdf/ontology/
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is equivalent to
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Database c
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has super-classes
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NCIT_C15426 c
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has sub-classes
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Anatomy/cell type resources c, Biological sample resources c, CRISP screens repositories c, Cell line collections (Providers) c, Cell line databases/resources c, Chemistry resources c, Encyclopedic resources c, Experimental variables resources c, Gene expression databases c, Medical resources c, Metabolomic databases c, Organism-specific databases c, Polymorphism and mutation databases c, Proteomic databases c, Reference resources c, Sequence databases c, Taxonomy c
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is in range of
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database op
Genome modification methodc back to ToC or Class ToC
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/GenomeModificationMethod
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is equivalent to
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{ BAC homologous recombination ni , Cre/loxP ni , CRISPR/Cas9 ni , CRISPR/Cas9n ni , EBV-based vector siRNA knockdown ni , Floxing/Cre recombination ni , Gamma radiation ni , Gene-targeted KO mouse ni , Gene trap ni , Genome modification method NOS ni , Helper-dependent adenoviral vector ni , Homologous recombination ni , Knockout-first conditional ni , KO mouse ni , KO pig ni , miRNA knockdown ni , Mutagenesis ni , Null mutation ni , P-element ni , PiggyBac transposition ni , Prime editing ni , Promoterless gene targeting ni , Recombinase-mediated cassette exchange ni , Recombinant Adeno-Associated Virus ni , shRNA knockdown ni , siRNA knockdown ni , Sleeping Beauty transposition ni , Spontaneous mutation ni , TALEN ni , Targeted integration ni , Transduction ni , Transduction/transfection ni , Transfection ni , Transfection/transduction ni , Transgenic fish ni , Transgenic mouse ni , Transgenic rat ni , X-ray ni , ZFN ni }
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has super-classes
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Genetic transformation c
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has sub-classes
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CRISPR/Cas9 c, Gamma radiation c, Gene trap c, Mutagenesis c, TALEN c, Transduction c, Transfection c, X-ray c, ZFN c, siRNA knockdown c
Journal articlec back to ToC or Class ToC
IRI: http://purl.org/spar/fabio/JournalArticle
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Is defined by
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http://purl.org/spar/fabio/
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has super-classes
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Publication c
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is in domain of
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ISO4 Journal Title Abbreviation dp, PMCID dp, PMID dp, volume dp
Publicationc back to ToC or Class ToC
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Publication
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Is defined by
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https://purl.expasy.org/cellosaurus/rdf/ontology/
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has super-classes
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Expression c
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has sub-classes
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Book c, Book chapter c, Conference paper c, Journal article c, Patent document c, Report document c, Thesis c
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is in domain of
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DOI dp, creator op, ending page dp, internal identifier dp, publication year dp, publisher op, starting page dp, title dp
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is in range of
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appears in op, originates from op, references ap
Object Properties
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/hasAnnotation
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Is defined by
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https://purl.expasy.org/cellosaurus/rdf/ontology/
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has sub-properties
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derived from cell type op, derived from individual belonging to breed op, derived from individual belonging to population op, derived from individual belonging to species op, derived from individual with disease op, derived from individual with sex op, derived from same individual as op, derived from site op, has HLA typing op, has anecdotal comment op, has biotechnology comment op, has caution comment op, has characteristics comment op, has child cell line op, has discontinuation record op, has donor info comment op, has doubling time op, has gene knockout op, has genetic integration op, has genome ancestry op, has karyotypic info comment op, has microsatellite instability op, has miscellaneous info comment op, has misspelling record op, has monoclonal antibody isotype op, has monoclonal antibody target op, has omics info op, has parent cell line op, has problematic cell line comment op, has registation record op, has resistance op, has senescence comment op, has sequence variation info op, has short tandem repeat profile op, has virology comment op, transformed by op
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is inverse of
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is about op
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/hasAntibodyHeavyChain
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Is defined by
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https://purl.expasy.org/cellosaurus/rdf/ontology/
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/hasAntibodyLightChain
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Is defined by
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https://purl.expasy.org/cellosaurus/rdf/ontology/
Data Properties
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/endingPage
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Is defined by
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https://purl.expasy.org/cellosaurus/rdf/ontology/
IRI: http://purl.org/dc/terms/identifier
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Is defined by
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http://purl.org/dc/terms/
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has sub-properties
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ISO4 Journal Title Abbreviation dp, ISSN13 dp, accession dp, allele identifier dp, has DOI dp, has PubMed Central Identifier dp, has PubMed Identifier dp, internal identifier dp, marker id dp, product Identifier dp, volume dp
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/startingPage
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Is defined by
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https://purl.expasy.org/cellosaurus/rdf/ontology/
Named Individuals
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Anecdotal
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belongs to
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General topic c
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has facts
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name ap "Anecdotal"
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Biotechnology
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belongs to
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Biotechnology c
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has facts
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name ap "Biotechnology"
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Caution
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belongs to
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General topic c
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has facts
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name ap "Caution"
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Characteristics
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belongs to
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General topic c
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has facts
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name ap "Characteristics"
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Discontinuation
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belongs to
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General topic c
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has facts
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name ap "Discontinuation"
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/DonorInfo
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belongs to
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General topic c
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has facts
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name ap "DonorInfo"
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/DoublingTime
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belongs to
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Doubling time c
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is also defined as
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class
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Miscellaneous
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belongs to
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General topic c
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has facts
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name ap "Miscellaneous"
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Misspelling
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belongs to
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General topic c
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has facts
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name ap "Misspelling"
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Omics
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belongs to
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Omics c
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has facts
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name ap "Omics"
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/ProblematicCellLine
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belongs to
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General topic c
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has facts
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name ap "Problematic cell line"
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Registration
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belongs to
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General topic c
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has facts
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name ap "Registration"
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Senescence
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belongs to
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Senescence c
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has facts
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name ap "Senescence"
IRI: https://purl.expasy.org/cellosaurus/rdf/ontology/Virology
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belongs to
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Virology c
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has facts
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name ap "Virology"